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The Blast Flash News

Ireland is the first European country in the currentfinancial crisis to opt for a "bad bank" scheme to cleanse itsbanking sector of bad debts triggered by a domestic propertycrash "The agency will be put on a statutory basis. * Govt looking at staffing for "bad bank" * Legislation expected before July recess DUBLIN, April 29 (Reuters) - Ireland is not waiting for legislation to start work on a "bad bank" to deal with thefinancial industry's risky property loans, Prime Minister BrianCowen said on Wednesday. For SitecoreKim Pegnato, Copyright Business Wire 2009.

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The Blast Facts

These proteins are combined into a general "profile" sequence, which summarises significant features present in these sequences.

It concatenates many input sequences together to form a large sequence before searching the BLAST database, then post-analyze the search results to glean individual alignments and statistical values.Of these programs, BLASTn and BLASTp are the most commonly used because they use direct comparisons, and do not require translations.

While attempting to find homology in sequences, sets of common letters, known as words, are very important.

In CS-BLAST, the mutation probabilities between amino acids depend not only on the single amino acid, as in BLAST, but also on its local sequence context (the six left and six right sequence neighbors).There are two main field-programmable gate array (FPGA) implementations of the BLAST algorithm.

These words must satisfy a requirement of having a score of at least the threshold, T, when compared by using a scoring matrix.

They also enable one to be able to directly see the function of the protein sequence, since by translating the sequence of interest before searching often gives you annotated protein hits.An extremely fast but considerably less sensitive alternative to BLAST that compares nucleotide sequences to the genome is BLAT (Blast Like Alignment Tool).

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